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reactome pathway database  (BioCarta)

 
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    BioCarta reactome pathway database
    Reactome Pathway Database, supplied by BioCarta, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/reactome+pathway+database/reactome/10__7554_slash_elife__02725-182-10-10
    Average 90 stars, based on 1 article reviews
    reactome pathway database - by Bioz Stars, 2026-09
    90/100 stars

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    other:

    Article Title: Mismatch repair deficiency endows tumors with a unique mutation signature and sensitivity to DNA double-strand breaks
    Article Snippet: GenomeMuSiC analyses based on either the independently assembled Reactome or BioCarta pathway databases, ranked respectively the ‘ATR/BRCA pathway and the DNA repair’ pathway first, with the more specific ‘Homologous recombination repair’ pathway ranking third in the latter (Table 2).



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    Number and percentage of significant coevolved MSigDB groups in different methods

    Journal: Molecular Systems Biology

    Article Title: Human disease locus discovery and mapping to molecular pathways through phylogenetic profiling

    doi: 10.1038/msb.2013.50

    Figure Lengend Snippet: Number and percentage of significant coevolved MSigDB groups in different methods

    Article Snippet: These gene sets include genes that are significantly changed in expression in tumors ( ; ; ), gene coexpressed under similar conditions, genes that bear similar transcriptional or miRNA regulatory sequences ( ; ), or genes annotated to function in similar processes based on the pathway and ontology databases such as GO , KEGG , REACTOME , and BIOCARTA.

    Techniques:

    Data sources used by WhichGenes to automatically construct gene sets

    Journal: Nucleic Acids Research

    Article Title: WhichGenes: a web-based tool for gathering, building, storing and exporting gene sets with application in gene set enrichment analysis

    doi: 10.1093/nar/gkp263

    Figure Lengend Snippet: Data sources used by WhichGenes to automatically construct gene sets

    Article Snippet: WhichGenes currently supports queries about Homo sapiens and Mus musculus organisms by retrieving up-to-date gene lists directly coming from multiple databases, currently including Ensembl, MSigDB, KEGG/Biocarta/Reactome pathway databases, GeneCards, CancerGenes, Decipher, Diseases CTD, TargetScan, miRBase, Chemical CTD, AmiGO and IntAct.

    Techniques: Construct